The Python packages below have been accepted into the pyOpenSci ecosystem through our open software peer review process.
Explore our accepted open source Python packages
To date, 59 packages have been accepted by pyOpenSci through our open peer review process. You can check out the packages that are currently under review in our GitHub submission repository.
Click here to learn more about the process for submitting a package to pyOpenSci.
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To view packages affiliated with our partner communities that are a part of ourpeer review partnership program, click on a community link below. Learn more about our community partnerships here.
Accepted pyOpenSci packages
BlockingPy
Blocking records for record linkage and deduplication with Approximate Nearest Neighbor algorithms.;
swiftgalaxy
Load in particles of a simulated galaxy, rotate coordinates, easy spherical/cylindrical coordinates, access integrated properties, and more.
ChemInformant
A robust, high-throughput Python client for retrieving chemical information from the PubChem API; it returns analysis-ready Pandas/SQL outputs, handles caching, rate-limiting and retries, and includes convenient CLI tools.
FElupe
Finite element analysis for continuum mechanics of solid bodies.
Pyinterpolate
Spatial interpolation: Kriging and Variogram Analysis toolset
GALAssify
A Python package for visually classifying astronomical objects
GALFITools
A library for efficient data processing customized for the GALFIT package
pymultifit
A python library for fitting data with multiple models.
AMS
Power system dispatch modeling and dispatch-dynamic co-simulation.
CyNetDiff
A performance-focused library implementing algorithms for simulating network diffusion processes, written in Cython.
GREOPy
Calculate relativistic light rays sent by an emitter to a receiver in the presence of a gravitational field.
PIVA
Visualization and analysis toolkit for experimental data from Angle-Resolved Photoemission Spectroscopy (ARPES)
Solar Data Tools
Library of tools for analyzing photovoltaic power time-series data.
neonutilities
neonutilities is a package for accessing and wrangling data generated and published by the National Ecological Observatory Network.
MontePy
MontePy is a python library for reading, editing, and writing MCNP input files.
PetroFit
The PetroFit Project is an open-source effort to develop end-to-end tools for making accurate photometric measurements, estimating morphological properties, and fitting 2D models to galaxy images.
PyPartMC
Python interface to PartMC aerosol-dynamics Monte-Carlo simulation package
plot_phylo
A Python package to plot a phylogenetic tree on an existing Matplotlib axis.
sourmash
sourmash is a command line tool and Python library for sketching collections of DNA, RNA, and amino acid k-mers for biological sequence search, comparison, and analysis.
QuadratiK
QuadratiK includes test for multivariate normality, test for uniformity on the sphere, non-parametric two- and k-sample tests, random generation of points from the Poisson kernel-based density and clustering algorithm for spherical data.
THzTools
Data analysis software tools for terahertz time-domain spectroscopy (THz-TDS)
Stingray
A spectral-timing software package for astrophysical X-ray (and other) data
pooltool
Pooltool is a general purpose billiards simulator crafted specifically for science and engineering.
harmonize-wq
Standardize, clean, and wrangle Water Quality Portal data into more analytic-ready formats
automata
A Python library for simulating finite automata, pushdown automata, and Turing machines.
martini
MARTINI is a modular package for the creation of synthetic resolved HI line observations (data cubes) of smoothed-particle hydrodynamics simulations of galaxies.
SLEPLET
Slepian Scale-Discretised Wavelets in Python
ZodiPy
Zodiacal emission simulations in timestreams or HEALPix for solar system observers.
xnemogcm
Interface to open NEMO global circulation model output dataset with xarray and create a xgcm grid.
EOmaps
EOmaps is a python package to visualize, analyze and compare geographical datasets.
Sciform
A package for converting python numbers (floats, Decimals) into scientific-formatted strings more suitable for reading and presentation.
ncompare
ncompare compares two netCDF files at the command line, by generating a report of the matching and non-matching groups, variables, and attributes.
biocypher
framework for creating biomedical knowledge graphs
astartes
Better Data Splits for Machine Learning
XGI
XGI is a Python package for higher-order networks.
cardsort
A python package to analyse data from open card sorting tasks
Python-graphblas
Python library for GraphBLAS: high-performance sparse linear algebra for scalable graph analytics
bibat
An interactive template for Bayesian statistical analysis projects
taxpasta
TAXonomic Profile Aggregation and STAndardisation
afscgap
Community contributed Python-based tools for working with public bottom trawl surveys data from the NOAA Alaska Fisheries Science Center Groundfish Assessment Program (NOAA AFSC GAP).
xclim
Climate indices computation package based on Xarray
crowsetta
A Python tool to work with any format for annotating animal vocalizations and bioacoustics data.
Pynteny
Query sequence database by HMMs arranged in predefined synteny structure
Jointly
Jointly is a python package for synchronizing sensors with accelerometer data
Devicely
A Python package for reading, timeshifting and writing sensor data
openomics
Library for integration of multi-omics, annotation, and interaction data
pystiche
Framework for Neural Style Transfer (NST) built upon PyTorch
pyrolite
A set of tools for getting the most from your geochemical data.
MovingPandas
Trajectory classes and functions built on top of GeoPandas
pandera
validate the types, properties, and statistics of pandas data structures
Archived Packages
Archived packages are packages that have successfully completed pyOpenSci’s software peer review process but are no longer maintained. Check out our software maintenance policy for how we determine when a package becomes archived.
earthpy
A package built to support working with spatial data using open source python
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- JOSS Approved
- Archived
Nbless
Construct, deconstruct, convert, execute, & prepare slides from Jupyter notebooks
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- Archived