The scientific Python packages below have been accepted into the pyOpenSci ecosystem through our open peer review process.
Explore our accepted scientific Python open source packages
To date, 20 packages have been accepted into the pyOpenSci ecosystem. Click here to check out packages that are currently under review.
bibat
An interactive template for Bayesian statistical analysis projects
cardsort
A python package to analyse data from open card sorting tasks
Python-graphblas
taxpasta
TAXonomic Profile Aggregation and STAndardisation
afscgap
Community contributed Python-based tools for working with public bottom trawl surveys data from the NOAA Alaska Fisheries Science Center Groundfish Assessment Program (NOAA AFSC GAP).
xclim
Climate indices computation package based on Xarray
crowsetta
A Python tool to work with any format for annotating animal vocalizations and bioacoustics data.
Pynteny
Query sequence database by HMMs arranged in predefined synteny structure
PyGMT
A Python interface for the Generic Mapping Tools
Jointly
Jointly is a python package for synchronizing sensors with accelerometer data
Physcraper
Automated phylogenetic updating
Devicely
A Python package for reading, timeshifting and writing sensor data
phenopype
a phenotyping pipeline for Python
openomics
Library for integration of multi-omics, annotation, and interaction data
pystiche
Framework for Neural Style Transfer (NST) built upon PyTorch
pyrolite
A set of tools for getting the most from your geochemical data.
MovingPandas
Trajectory classes and functions built on top of GeoPandas
earthpy
A package built to support working with spatial data using open source python
pandera
validate the types, properties, and statistics of pandas data structures
Nbless
Construct, deconstruct, convert, execute, & prepare slides from Jupyter notebooks